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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
52
single cell RNA-seq
5
total RNA-seq
1
Hi-C
1
pCHi-C
Assay category
59
DNA binding
57
Transcription
1
3D chromatin structure
Target of assay
42
transcription factor
8
RNA binding protein
8
chromatin remodeller
8
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
116
bam
113
fastq
108
bigWig
57
tsv
51
bed narrowPeak
51
bigBed narrowPeak
1
bedpe bed3+
Organism
118
Homo sapiens
Biosample type
51
cell line
46
primary cell
20
tissue
1
in vitro differentiated cells
Organ
45
blood
45
bodily fluid
42
pancreas
36
epithelium
14
spleen
6
liver
3
connective tissue
1
adipose tissue
Project
118
AMP
Genome assembly (visualization)
108
GRCh38
108
hg19
Lab
118
AMP-T2D consortium
Audit category:
1
inconsistent control
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
pCHi-C
cell line
GM12878
45
HepG2
5
1
primary cell
pancreatic acinar cell
7
pancreatic delta cell
7
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 5 more…
tissue
spleen
14
islet of Langerhans
6
in vitro differentiated cells
white fat cell
1
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