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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
single cell RNA-seq
40
ChIP-seq
8
ATAC-seq
5
total RNA-seq
Assay category
54
Transcription
40
DNA binding
8
DNA accessibility
Target of assay
19
histone
19
histone modification
14
broad histone mark
14
transcription factor
7
control
6
RNA binding protein
6
chromatin remodeller
5
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
94
bam
91
fastq
89
bigWig
54
tsv
33
bed narrowPeak
27
bigBed narrowPeak
14
tagAlign
4
bed broadPeak
Organism
102
Homo sapiens
Biosample type
43
primary cell
36
tissue
23
cell line
Organ
44
pancreas
33
epithelium
18
blood
18
bodily fluid
16
brain
8
spleen
5
liver
3
connective tissue
1
adipose tissue
Project
102
AMP
Genome assembly (visualization)
89
GRCh38
88
hg19
Lab
101
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
month_released!
May, 2023
BIOSAMPLE
ASSAY
102 results
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Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 5 more…
tissue
brain
15
spleen
7
1
islet of Langerhans
6
1
body of pancreas
4
cerebellum (Hemisphere)
1
+ See 1 more…
cell line
GM12878
18
HepG2
5
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