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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
total RNA-seq
92
single cell RNA-seq
70
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
218
Transcription
70
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
300
bam
293
bigWig
213
tsv
182
fastq
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
305
Homo sapiens
Biosample type
152
tissue
92
primary cell
61
cell line
Organ
203
pancreas
66
epithelium
53
liver
15
blood
15
bodily fluid
9
spleen
5
connective tissue
2
brain
1
adipose tissue
Project
305
AMP
Genome assembly (visualization)
292
GRCh38
284
hg19
Lab
305
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
305 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
126
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
primary cell
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
pancreatic alpha cell
10
pancreatic ductal cell
9
+ See 11 more…
cell line
HepG2
45
1
GM12878
15
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