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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
55
single cell RNA-seq
44
total RNA-seq
31
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
1
pCHi-C
Assay category
195
DNA accessibility
117
Transcription
31
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
352
bam
347
bigWig
217
bed narrowPeak
212
bigBed narrowPeak
191
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
117
tsv
48
fastq
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
1
bedpe bed3+
Organism
379
Homo sapiens
Biosample type
246
tissue
132
primary cell
1
in vitro differentiated cells
Organ
92
kidney
69
epithelium
60
heart
53
musculature of body
52
pancreas
48
brain
39
connective tissue
37
limb
19
vasculature
18
ureter
16
blood vessel
14
adipose tissue
12
liver
8
eye
5
artery
2
pericardium
Project
379
AMP
Genome assembly (visualization)
341
GRCh38
330
hg19
Lab
379
AMP-T2D consortium
Audit category:
28
inconsistent ontology term
BIOSAMPLE
ASSAY
379 results
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Clear Filters
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
pCHi-C
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
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primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
1
mesenchymal stem cell
7
pancreatic acinar cell
7
pancreatic delta cell
7
+ See 38 more…
in vitro differentiated cells
white fat cell
1
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