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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
single cell RNA-seq
19
total RNA-seq
10
Hi-C
4
ATAC-seq
3
ChIP-seq
2
pCHi-C
Assay category
62
Transcription
10
3D chromatin structure
4
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
69
bigWig
65
bam
64
tsv
44
fastq
12
bedpe bed3+
10
hic
3
bed narrowPeak
2
ibed
Organism
81
Homo sapiens
Biosample type
44
primary cell
24
tissue
7
cell line
6
in vitro differentiated cells
Organ
50
pancreas
39
epithelium
4
heart
4
musculature of body
3
blood vessel
3
vasculature
2
connective tissue
2
liver
1
vein
Project
76
AMP
5
T1D
Genome assembly (visualization)
81
hg19
65
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
81 results
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Clear Filters
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
pCHi-C
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 6 more…
tissue
islet of Langerhans
6
2
2
psoas muscle
2
2
aorta
1
1
heart left ventricle
1
1
heart right ventricle
1
1
+ See 2 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
1
lymphocyte of B lineage (iPSC)
1
1
1
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