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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
total RNA-seq
44
single cell RNA-seq
35
ChIP-seq
32
pCHi-C
18
ATAC-seq
10
Hi-C
Assay category
91
Transcription
35
DNA binding
18
DNA accessibility
10
3D chromatin structure
Target of assay
35
histone
35
histone modification
18
narrow histone mark
17
broad histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
141
bigWig
137
bam
120
tsv
117
fastq
49
bed narrowPeak
14
bigBed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
1
csv
Organism
186
Homo sapiens
Biosample type
117
primary cell
46
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
Organ
125
pancreas
100
epithelium
7
heart
5
musculature of body
4
blood vessel
4
connective tissue
4
vasculature
3
liver
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
179
AMP
7
T1D
Genome assembly (visualization)
153
hg19
137
GRCh38
Lab
186
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
186 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
Hi-C
primary cell
pancreatic ductal cell
4
6
13
4
pancreatic acinar cell
2
6
8
3
pancreatic beta cell
10
3
4
pancreatic alpha cell
10
3
3
pancreatic endocrine cell
11
+ See 7 more…
tissue
islet of Langerhans
8
2
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
1
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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