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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
total RNA-seq
43
single cell RNA-seq
29
ATAC-seq
11
ChIP-seq
1
DNAme array
Assay category
172
Transcription
29
DNA accessibility
11
DNA binding
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
narrow histone mark
4
transcription factor
2
broad histone mark
1
control
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
191
bam
177
bigWig
171
tsv
44
fastq
19
bed narrowPeak
6
tagAlign
Organism
213
Homo sapiens
Biosample type
85
in vitro differentiated cells
63
primary cell
44
tissue
21
cell line
Organ
99
pancreas
59
epithelium
3
connective tissue
3
heart
2
embryo
Project
212
AMP
1
T1D
Genome assembly (visualization)
190
GRCh38
190
hg19
Lab
235
Kyle Gaulton, UCSD
213
AMP-T2D consortium
Audit category:
89
inconsistent ontology term
BIOSAMPLE
ASSAY
213 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
DNAme array
in vitro differentiated cells
cardiomyocytes
59
3
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
primary cell
monocyte
1
13
1
1
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
+ See 9 more…
tissue
islet of Langerhans
42
cardiac atrium
1
cardiac ventricle
1
cell line
EndoC_BH1
4
16
1
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