Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
126
total RNA-seq
91
single cell RNA-seq
Assay category
406
DNA binding
217
Transcription
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
605
bam
547
bigWig
418
fastq
313
bed narrowPeak
312
bigBed narrowPeak
213
tsv
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
623
Homo sapiens
Biosample type
315
cell line
208
tissue
100
primary cell
Organ
315
liver
196
pancreas
91
brain
72
epithelium
6
vasculature
4
connective tissue
3
blood vessel
Project
623
AMP
Genome assembly (visualization)
494
hg19
493
GRCh38
Lab
623
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
623 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
315
tissue
islet of Langerhans
126
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
pancreatic alpha cell
10
pancreatic ductal cell
9
+ See 14 more…
See all biosamples
Download