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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
44
single cell RNA-seq
9
DNase-seq
7
WGBS
6
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
104
DNA binding
50
Transcription
10
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
92
transcription factor
23
RNA binding protein
16
recombinant protein
10
control
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
170
bam
167
fastq
159
bigWig
103
bed narrowPeak
103
bigBed narrowPeak
49
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
172
Homo sapiens
Biosample type
89
cell line
44
primary cell
39
tissue
Organ
54
liver
46
pancreas
42
blood
42
bodily fluid
33
epithelium
16
spleen
3
connective tissue
2
brain
1
adipose tissue
Project
172
AMP
Genome assembly (visualization)
158
GRCh38
150
hg19
Lab
172
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
Hi-C
cell line
HepG2
45
1
1
GM12878
42
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 5 more…
tissue
spleen
13
1
2
islet of Langerhans
6
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
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