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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
single cell RNA-seq
20
ATAC-seq
20
total RNA-seq
13
ChIP-seq
4
DNase-seq
2
Hi-C
Assay category
59
Transcription
24
DNA accessibility
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
96
bam
74
bigWig
59
tsv
35
bed narrowPeak
34
fastq
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
98
Homo sapiens
Biosample type
49
tissue
33
primary cell
16
cell line
Organ
98
pancreas
81
kidney
69
epithelium
43
musculature of body
35
heart
32
limb
30
brain
21
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
2
liver
Project
98
AMP
Genome assembly (visualization)
94
GRCh38
94
hg19
Lab
98
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
98 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
6
19
19
1
body of pancreas
2
pancreas
2
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
pancreatic alpha cell
3
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cell line
EndoC_BH1
1
1
13
1
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