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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
46
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
10
MeRIP-seq
8
Hi-C
7
ATAC-seq
2
FAIRE-seq
1
DNase-seq
Assay category
118
Transcription
27
DNA methylation
10
DNA accessibility
8
3D chromatin structure
Target of assay
8
control
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
139
bigWig
137
bam
118
tsv
44
fastq
23
bed bedMethyl
23
bigBed bedMethyl
9
bed narrowPeak
5
bed bed3+
4
hdf5
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
173
Homo sapiens
Biosample type
87
tissue
80
primary cell
6
cell line
Organ
55
pancreas
52
epithelium
26
connective tissue
25
heart
18
brain
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
173
AMP
Genome assembly (visualization)
146
hg19
134
GRCh38
Lab
163
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
173 results
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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
MeRIP-seq
Hi-C
ATAC-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
6
1
4
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
primary cell
pancreatic delta cell
7
osteoblast
4
1
1
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
+ See 31 more…
cell line
EndoC_BH1
6
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