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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
44
single cell RNA-seq
32
total RNA-seq
14
ATAC-seq
Assay category
438
DNA binding
76
Transcription
14
DNA accessibility
Target of assay
244
transcription factor
120
histone
120
histone modification
71
control
67
broad histone mark
66
recombinant protein
53
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
513
bam
455
bigWig
441
fastq
359
bed narrowPeak
326
bigBed narrowPeak
78
tagAlign
75
tsv
70
bed broadPeak
64
bigBed broadPeak
3
tar
1
csv
Organism
528
Homo sapiens
Biosample type
315
cell line
125
primary cell
88
tissue
Organ
315
liver
111
pancreas
100
epithelium
91
brain
6
vasculature
3
blood vessel
2
connective tissue
Project
528
AMP
Genome assembly (visualization)
402
hg19
401
GRCh38
Lab
528
AMP-T2D consortium
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
528 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
cell line
HepG2
315
primary cell
pancreatic ductal cell
13
6
4
4
pancreatic acinar cell
8
6
2
3
pancreatic beta cell
3
10
4
pancreatic alpha cell
3
10
3
pancreatic endocrine cell
11
+ See 9 more…
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
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