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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
20
total RNA-seq
1
ChIP-seq
Assay category
81
DNA accessibility
54
Transcription
41
DNA methylation
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
134
zippedFastqFolder
bam
103
bed narrowPeak
85
bigWig
64
bigBed narrowPeak
24
fastq
7
txt
1
bed bed3+
Organism
177
Homo sapiens
Biosample type
134
primary cell
43
tissue
Organ
80
epithelium
80
pancreas
40
liver
2
musculature of body
1
heart
Project
134
HPAP
43
AMP
Genome assembly (visualization)
22
hg19
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
3
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
177 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
skeletal muscle tissue
1
1
heart left ventricle
1
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