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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
ChIP-seq
104
total RNA-seq
15
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
284
DNA binding
104
Transcription
20
DNA accessibility
2
DNA methylation
Target of assay
178
histone modification
177
histone
93
broad histone mark
83
narrow histone mark
53
control
53
transcription factor
12
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
410
bam
384
bigWig
313
bed narrowPeak
287
fastq
212
tsv
109
tagAlign
106
bigBed narrowPeak
64
xls
57
txt
41
bed broadPeak
38
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
vcf
Organism
403
Homo sapiens
Biosample type
249
tissue
91
in vitro differentiated cells
62
primary cell
8
cell line
Organ
168
pancreas
71
connective tissue
56
heart
33
epithelium
30
liver
23
kidney
17
adipose tissue
8
embryo
Project
410
AMP
Genome assembly (visualization)
356
hg19
354
GRCh38
Lab
410
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
410 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
heart left ventricle
34
liver
25
kidney
23
pancreas
14
+ See 6 more…
in vitro differentiated cells
adipocyte
53
1
neural progenitor cell
20
7
10
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
hepatocyte
4
+ See 1 more…
cell line
H1-hESC
8
See all biosamples
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