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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
ATAC-seq
49
total RNA-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
123
DNA binding
57
Transcription
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
80
histone
80
histone modification
46
broad histone mark
34
narrow histone mark
26
control
17
transcription factor
5
RNA binding protein
Date released
406
November, 2017
317
August, 2017
276
October, 2019
218
June, 2019
192
May, 2021
134
February, 2021
123
May, 2022
120
August, 2021
120
May, 2019
98
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
56
September, 2020
52
May, 2020
47
September, 2023
40
May, 2024
37
July, 2019
35
December, 2018
33
September, 2018
25
January, 2019
24
February, 2018
19
April, 2020
17
March, 2020
16
January, 2021
15
November, 2019
15
October, 2017
11
November, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
July, 2018
4
May, 2023
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
1
March, 2019
Available data
tsv
118
bam
110
bigWig
95
bed narrowPeak
64
bigBed narrowPeak
57
txt
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
199
Homo sapiens
Biosample type
146
tissue
27
cell line
23
in vitro differentiated cells
4
primary cell
Organ
89
kidney
57
heart
26
liver
6
epithelium
3
connective tissue
3
pancreas
1
adipose tissue
Project
200
AMP
Genome assembly (visualization)
98
hg19
80
GRCh38
Lab
108
AMP-T2D consortium
64
Katalin Susztak, Upenn
26
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
tsv
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
200 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
23
49
8
6
1
heart left ventricle
35
heart right ventricle
13
heart
9
islet of Langerhans
1
+ See 1 more…
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
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