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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
76
ATAC-seq
49
total RNA-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
123
DNA binding
82
DNA accessibility
57
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
80
histone
80
histone modification
46
broad histone mark
34
narrow histone mark
26
control
17
transcription factor
5
RNA binding protein
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
171
bed narrowPeak
128
bam
tsv
112
bigWig
64
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
275
Homo sapiens
Biosample type
210
tissue
35
in vitro differentiated cells
27
cell line
4
primary cell
Organ
153
kidney
57
heart
26
liver
6
epithelium
5
connective tissue
3
pancreas
1
adipose tissue
Project
276
AMP
Genome assembly (visualization)
154
GRCh38
110
hg19
Lab
128
Katalin Susztak, Upenn
118
AMP-T2D consortium
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
November, 2020
files.file_type!
tsv
BIOSAMPLE
ASSAY
276 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
23
64
49
8
6
1
heart left ventricle
35
heart right ventricle
13
heart
9
islet of Langerhans
1
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in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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