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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
101
ChIP-seq
76
ATAC-seq
65
total RNA-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
Assay category
171
Transcription
101
DNA binding
82
DNA accessibility
2
3D chromatin structure
Target of assay
74
histone
74
histone modification
44
broad histone mark
30
narrow histone mark
21
control
6
transcription factor
4
RNA binding protein
Date released
712
February, 2021
399
May, 2021
357
August, 2017
307
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
154
bed narrowPeak
124
bam
114
tsv
95
bigWig
64
bigBed narrowPeak
64
xls
57
txt
20
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
363
Homo sapiens
Biosample type
309
tissue
42
in vitro differentiated cells
13
cell line
Organ
153
kidney
149
heart
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
364
AMP
Genome assembly (visualization)
166
GRCh38
107
hg19
Lab
227
AMP-T2D consortium
128
Katalin Susztak, Upenn
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
November, 2020
organ_slims!
liver
BIOSAMPLE
ASSAY
364 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
tissue
kidney
8
23
64
49
6
1
heart left ventricle
18
35
heart right ventricle
17
13
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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