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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
Assay category
80
DNA binding
65
Transcription
27
DNA methylation
8
3D chromatin structure
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
17
control
6
transcription factor
4
RNA binding protein
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
153
bam
142
bigWig
65
bed narrowPeak
65
tsv
64
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
180
Homo sapiens
Biosample type
149
tissue
31
primary cell
Organ
78
heart
33
kidney
18
connective tissue
16
brain
13
epithelium
12
adipose tissue
10
liver
10
musculature of body
10
vasculature
9
blood vessel
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
180
AMP
Genome assembly (visualization)
149
hg19
137
GRCh38
Lab
180
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
180 results
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ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
tissue
heart left ventricle
35
2
1
4
kidney
23
1
heart right ventricle
13
2
heart
9
2
1
1
omental fat pad
4
1
+ See 24 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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