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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
111
ChIP-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
195
DNA accessibility
111
DNA binding
65
Transcription
27
DNA methylation
8
3D chromatin structure
Target of assay
79
histone
79
histone modification
45
broad histone mark
34
narrow histone mark
25
control
10
transcription factor
8
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
379
bam
360
bigWig
282
bed narrowPeak
276
bigBed narrowPeak
191
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
Organism
406
Homo sapiens
Biosample type
320
tissue
86
primary cell
Organ
117
heart
115
kidney
53
musculature of body
48
brain
37
limb
36
connective tissue
33
epithelium
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
8
eye
5
artery
2
pericardium
Project
406
AMP
Genome assembly (visualization)
353
GRCh38
343
hg19
Lab
406
AMP-T2D consortium
Audit category:
28
inconsistent ontology term
BIOSAMPLE
ASSAY
406 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
3
35
2
1
4
2
kidney
13
23
1
1
heart
18
9
2
1
1
muscle of arm
17
heart right ventricle
1
13
2
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primary cell
skeletal muscle satellite cell
8
1
1
cardiac fibroblast
3
5
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
3
1
1
cardiac muscle cell
1
3
1
+ See 28 more…
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