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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
42
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
Assay category
80
DNA binding
58
Transcription
3
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
81
bam
70
bigWig
65
bed narrowPeak
64
bigBed narrowPeak
43
fastq
19
zippedFastqFolder
2
tsv
Organism
141
Homo sapiens
Biosample type
80
tissue
61
primary cell
Organ
57
heart
23
kidney
20
epithelium
20
pancreas
Project
82
AMP
59
HPAP
Genome assembly (visualization)
69
GRCh38
67
hg19
Lab
82
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
141 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
pancreatic cell
1
pancreatic ductal cell
1
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