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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
111
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
286
DNA accessibility
111
DNA binding
60
Transcription
41
DNA methylation
Target of assay
79
histone
79
histone modification
45
broad histone mark
34
narrow histone mark
22
control
10
transcription factor
8
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
321
bam
313
bed narrowPeak
295
bigWig
274
bigBed narrowPeak
188
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
134
zippedFastqFolder
24
fastq
7
txt
Organism
498
Homo sapiens
Biosample type
309
tissue
189
primary cell
Organ
108
pancreas
104
kidney
100
epithelium
92
heart
45
musculature of body
42
liver
32
limb
30
brain
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
364
AMP
134
HPAP
Genome assembly (visualization)
291
hg19
274
GRCh38
Lab
300
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
498 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
heart left ventricle
3
35
kidney
13
23
heart
18
9
islet of Langerhans
18
6
+ See 37 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 21 more…
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