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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
81
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
2
Hi-C
Assay category
114
DNA binding
103
DNA accessibility
60
Transcription
41
DNA methylation
2
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
34
transcription factor
23
narrow histone mark
18
control
6
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
138
bam
134
zippedFastqFolder
133
bed narrowPeak
115
bigWig
94
bigBed narrowPeak
60
fastq
7
txt
1
bed bed3+
1
bed broadPeak
1
bedpe
1
hic
Organism
320
Homo sapiens
Biosample type
158
tissue
134
primary cell
28
cell line
Organ
109
pancreas
80
epithelium
57
heart
41
liver
27
blood
27
bodily fluid
23
kidney
7
spleen
2
musculature of body
Project
186
AMP
134
HPAP
Genome assembly (visualization)
137
hg19
96
GRCh38
Lab
134
Klaus Kaestner, Upenn
117
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
320 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
Hi-C
tissue
liver
20
20
heart left ventricle
35
islet of Langerhans
22
6
1
kidney
23
heart right ventricle
13
+ See 3 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cell line
GM12878
27
HepG2
1
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