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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
182
total RNA-seq
38
ATAC-seq
17
pCHi-C
1
DNAme array
1
Hi-C
Assay category
182
Transcription
38
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
0
April, 2019
Available data
187
bam
180
bigWig
173
tsv
13
bed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
239
Homo sapiens
Biosample type
89
in vitro differentiated cells
85
primary cell
45
tissue
20
cell line
Organ
62
pancreas
22
epithelium
3
heart
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
171
AMP
68
T1D
Genome assembly (visualization)
196
hg19
188
GRCh38
Lab
153
AMP-T2D consortium
81
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
86
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
239 results
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Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
Hi-C
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
5
5
induced pluripotent stem cell
9
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
primary cell
monocyte
52
13
1
1
CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
36
4
1
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
16
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