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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
483
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
483
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
249
transcription factor
147
histone
147
histone modification
87
broad histone mark
84
control
66
recombinant protein
60
narrow histone mark
40
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
469
bam
396
bigWig
376
bed narrowPeak
374
bigBed narrowPeak
322
fastq
78
tagAlign
69
bed broadPeak
62
bigBed broadPeak
3
tar
1
bedpe
1
hic
Organism
488
Homo sapiens
Biosample type
315
cell line
167
tissue
6
primary cell
Organ
315
liver
91
brain
57
heart
23
kidney
6
epithelium
6
vasculature
5
pancreas
blood vessel
Project
488
AMP
Genome assembly (visualization)
346
hg19
344
GRCh38
Lab
483
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
488 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
cell line
HepG2
315
tissue
heart left ventricle
35
kidney
23
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
+ See 6 more…
primary cell
astrocyte of the cerebellum
3
choroid plexus epithelial cell
3
See all biosamples
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