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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
126
ChIP-seq
12
ATAC-seq
1
Hi-C
Assay category
199
DNA accessibility
126
DNA binding
1
3D chromatin structure
Target of assay
91
histone
91
histone modification
55
broad histone mark
36
narrow histone mark
25
control
10
transcription factor
8
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
313
bam
289
bigWig
287
bed narrowPeak
280
bigBed narrowPeak
192
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
18
fastq
14
tagAlign
1
bedpe
1
hic
Organism
326
Homo sapiens
Biosample type
271
tissue
55
primary cell
Organ
104
kidney
92
heart
46
brain
43
musculature of body
32
limb
20
epithelium
19
connective tissue
18
ureter
14
pancreas
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
2
liver
1
spleen
Project
326
AMP
Genome assembly (visualization)
290
GRCh38
268
hg19
Lab
320
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
26
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
326 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
heart left ventricle
3
35
kidney
13
23
brain
12
15
heart
18
9
muscle of arm
17
+ See 36 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 17 more…
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