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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
total RNA-seq
133
ChIP-seq
104
ATAC-seq
33
pCHi-C
10
Hi-C
Assay category
205
Transcription
133
DNA binding
104
DNA accessibility
10
3D chromatin structure
Target of assay
90
histone
90
histone modification
53
narrow histone mark
37
broad histone mark
37
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
378
bam
345
bigWig
234
tsv
95
bed narrowPeak
64
bigBed narrowPeak
50
tagAlign
12
bedpe bed3+
10
hic
2
ibed
Organism
485
Homo sapiens
Biosample type
313
tissue
148
primary cell
12
cell line
8
in vitro differentiated cells
4
stem cell
Organ
197
liver
64
heart
25
kidney
14
pancreas
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
433
AMP
52
T1D
Genome assembly (visualization)
357
hg19
287
GRCh38
Lab
440
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
BIOSAMPLE
ASSAY
485 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
tissue
liver
144
50
1
1
heart left ventricle
1
35
1
1
kidney
23
heart right ventricle
1
13
1
1
heart
9
+ See 18 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
EndoC_BH1
2
1
2
early embryonic cell
2
HepG2
1
MCF-7
1
RCC 7860 VHL
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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