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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
23
ChIP-seq
22
snATAC-seq
Assay category
99
DNA accessibility
60
Transcription
41
DNA methylation
23
DNA binding
Target of assay
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
56
bed narrowPeak
47
bam
38
bigWig
24
fastq
18
bigBed narrowPeak
7
txt
1
bed bed3+
Organism
223
Homo sapiens
Biosample type
134
primary cell
89
tissue
Organ
104
pancreas
80
epithelium
heart
40
liver
23
kidney
2
musculature of body
Project
134
HPAP
89
AMP
Genome assembly (visualization)
57
hg19
18
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
25
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
organ_slims!
heart
BIOSAMPLE
ASSAY
223 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
kidney
23
skeletal muscle tissue
1
1
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