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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
40
single cell RNA-seq
20
total RNA-seq
10
MeRIP-seq
4
ATAC-seq
1
DNase-seq
Assay category
80
DNA binding
60
Transcription
5
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
19
control
6
transcription factor
5
nucleotide modification
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
85
bam
73
bigWig
67
bed narrowPeak
65
bigBed narrowPeak
41
fastq
19
zippedFastqFolder
4
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
155
Homo sapiens
Biosample type
84
tissue
65
primary cell
6
cell line
Organ
57
heart
29
pancreas
25
epithelium
23
kidney
6
connective tissue
Project
96
AMP
59
HPAP
Genome assembly (visualization)
73
GRCh38
71
hg19
Lab
86
AMP-T2D consortium
59
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
155 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
MeRIP-seq
ATAC-seq
DNase-seq
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
islet of Langerhans
4
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
osteoblast
4
1
1
pancreatic beta cell
1
1
cell line
EndoC_BH1
6
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