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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
37
snATAC-seq
ATAC-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
Transcription
37
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
317
August, 2017
262
October, 2019
218
June, 2019
183
May, 2021
130
February, 2021
120
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
63
August, 2021
63
May, 2022
51
May, 2020
45
March, 2020
40
May, 2024
37
July, 2019
35
December, 2018
32
September, 2018
25
January, 2019
24
February, 2018
16
January, 2021
15
November, 2019
15
October, 2017
11
November, 2020
10
April, 2020
8
February, 2023
6
September, 2017
5
January, 2018
4
October, 2022
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2019
1
March, 2023
Available data
84
txt
33
fastq
9
bam
9
tsv
8
tagAlign
5
bed narrowPeak
5
bigWig
2
bed bed3+
Organism
139
Homo sapiens
Biosample type
97
tissue
34
primary cell
9
cell line
Organ
84
bone element
10
lung
6
artery
6
blood vessel
6
epithelium
6
heart
6
pancreas
6
vasculature
3
kidney
1
connective tissue
1
liver
Project
97
AMP
33
HPAP
10
LungMap
Genome assembly (visualization)
7
hg19
5
GRCh38
Lab
97
AMP-T2D consortium
33
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
Audit category:
84
inconsistent ontology term
27
audit script error
assay_slims!
Transcription
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
140 results
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Clear Filters
RNA microarray
snATAC-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
lung
10
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
HepG2
1
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