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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ATAC-seq
18
ChIP-seq
16
snATAC-seq
10
total RNA-seq
9
single cell RNA-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
82
DNA accessibility
19
Transcription
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
235
May, 2021
192
May, 2022
111
August, 2021
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
80
bed narrowPeak
64
xls
txt
16
bigWig
10
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
129
Homo sapiens
Biosample type
92
tissue
34
cell line
4
in vitro differentiated cells
Organ
73
kidney
31
liver
19
lung
4
connective tissue
2
pancreas
Project
111
AMP
19
LungMap
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
AMP-T2D consortium
71
Katalin Susztak, Upenn
36
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
txt
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
130 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
total RNA-seq
single cell RNA-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
64
6
1
lung
10
9
islet of Langerhans
1
1
cell line
HepG2
18
9
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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