Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
77
ChIP-seq
76
ATAC-seq
25
total RNA-seq
16
snATAC-seq
5
STARR-seq
4
Capture-C
4
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
132
Transcription
92
DNA accessibility
77
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
39
transcription factor
20
histone
20
histone modification
16
control
11
narrow histone mark
9
broad histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
626
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
262
August, 2021
218
June, 2019
198
February, 2023
193
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
136
bed narrowPeak
123
tsv
83
bam
77
bigWig
64
xls
txt
35
fastq
30
bigBed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
314
Homo sapiens
Biosample type
198
tissue
72
cell line
42
in vitro differentiated cells
4
primary cell
Organ
92
heart
73
kidney
36
liver
27
blood
27
bodily fluid
19
lung
8
embryo
7
spleen
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
297
AMP
19
LungMap
Genome assembly (visualization)
135
GRCh38
90
hg19
Lab
186
AMP-T2D consortium
71
Katalin Susztak, Upenn
36
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
inconsistent control
files.file_type!
txt
BIOSAMPLE
ASSAY
316 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 13 more…
cell line
HepG2
18
9
2
2
1
GM12878
27
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
See all biosamples
Download