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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
116
single cell RNA-seq
84
ATAC-seq
74
total RNA-seq
16
snATAC-seq
9
DNase-seq
7
WGBS
5
STARR-seq
4
Capture-C
3
Hi-C
1
FAIRE-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
190
Transcription
128
DNA binding
110
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
75
transcription factor
32
histone
32
histone modification
22
RNA binding protein
21
control
19
broad histone mark
16
recombinant protein
13
narrow histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
191
bed narrowPeak
151
bam
141
bigWig
123
tsv
105
fastq
79
bigBed narrowPeak
64
xls
57
txt
38
tagAlign
14
bed bed3+
13
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
vcf
Organism
447
Homo sapiens
Biosample type
297
tissue
105
cell line
42
in vitro differentiated cells
5
primary cell
Organ
130
kidney
92
heart
88
liver
19
lung
18
brain
16
pancreas
15
blood
15
bodily fluid
10
spleen
8
embryo
7
connective tissue
6
blood vessel
6
epithelium
6
vasculature
3
adipose tissue
2
artery
Project
430
AMP
19
LungMap
Genome assembly (visualization)
198
GRCh38
144
hg19
Lab
261
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
449 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
WGBS
STARR-seq
Capture-C
Hi-C
FAIRE-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 20 more…
cell line
HepG2
63
9
1
2
1
1
GM12878
15
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
pancreatic cell
1
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