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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
285
ChIP-seq
183
total RNA-seq
45
ATAC-seq
17
pCHi-C
12
single cell RNA-seq
10
snATAC-seq
1
DNAme array
Assay category
285
DNA binding
195
Transcription
55
DNA accessibility
1
DNA methylation
Target of assay
232
histone
232
histone modification
134
broad histone mark
98
narrow histone mark
32
control
21
transcription factor
10
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
400
bigWig
397
bam
230
bed narrowPeak
173
tsv
97
bigBed narrowPeak
90
tagAlign
2
bed bed3+
Organism
552
Homo sapiens
Biosample type
211
primary cell
189
tissue
132
in vitro differentiated cells
21
cell line
Organ
63
pancreas
50
blood vessel
50
vasculature
31
epithelium
28
brain
24
heart
19
kidney
19
lung
7
limb
7
musculature of body
5
artery
3
connective tissue
2
embryo
1
adipose tissue
1
bone element
1
bone marrow
1
thymus
Project
381
AMP
153
T1D
19
LungMap
Genome assembly (visualization)
414
hg19
384
GRCh38
Lab
285
AMP-T2D consortium
235
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
Audit category:
93
inconsistent ontology term
BIOSAMPLE
ASSAY
553 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
DNAme array
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
kidney epithelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
+ See 12 more…
tissue
islet of Langerhans
36
lung
9
10
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 14 more…
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
37
5
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
cell line
EndoC_BH1
1
4
16
See all biosamples
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