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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
2
total RNA-seq
1
Hi-C
Assay category
108
DNA binding
11
Transcription
10
DNA accessibility
1
3D chromatin structure
Target of assay
43
transcription factor
33
control
30
histone
30
histone modification
19
broad histone mark
13
RNA binding protein
11
narrow histone mark
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
110
bam
95
fastq
77
bigWig
75
bed narrowPeak
75
bigBed narrowPeak
2
tsv
Organism
129
Homo sapiens
Biosample type
100
tissue
28
cell line
2
primary cell
Organ
53
pancreas
27
blood
27
bodily fluid
23
adipose tissue
23
connective tissue
19
lung
7
spleen
2
epithelium
1
liver
Project
111
AMP
19
LungMap
Genome assembly (visualization)
77
GRCh38
77
hg19
Lab
111
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
130 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
tissue
body of pancreas
33
lung
10
9
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
+ See 2 more…
cell line
GM12878
27
HepG2
1
primary cell
pancreatic acinar cell
2
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