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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
84
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
4
Hi-C
1
MPRA
1
pCHi-C
Assay category
199
Transcription
110
DNA accessibility
84
DNA binding
4
3D chromatin structure
Target of assay
28
transcription factor
27
control
27
histone
27
histone modification
27
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
317
bam
290
bigWig
189
tsv
57
bed narrowPeak
50
tagAlign
35
fastq
30
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
397
Homo sapiens
Biosample type
219
tissue
150
primary cell
30
cell line
Organ
195
liver
27
blood
27
bodily fluid
19
lung
7
spleen
3
epithelium
3
pancreas
Project
332
AMP
45
T1D
19
LungMap
3
HPAP
Genome assembly (visualization)
293
hg19
237
GRCh38
Lab
332
AMP-T2D consortium
45
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
3
Klaus Kaestner, Upenn
Audit category:
8
inconsistent ontology term
3
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
399 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
Hi-C
MPRA
pCHi-C
tissue
liver
143
50
lung
10
9
spleen
7
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
cell line
GM12878
27
HepG2
1
1
MIN6
1
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