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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
Assay category
51
DNA binding
5
DNA accessibility
1
DNA methylation
Target of assay
36
histone
36
histone modification
21
narrow histone mark
15
broad histone mark
13
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
51
August, 2017
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
Available data
51
bam
51
fastq
39
bigWig
26
bed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
12
bigBed narrowPeak
11
tagAlign
Organism
51
Homo sapiens
Biosample type
175
tissue
67
in vitro differentiated cells
51
primary cell
Organ
38
pancreas
26
epithelium
Project
51
AMP
Genome assembly (visualization)
39
hg19
37
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
skeletal muscle myoblast
13
pancreatic endocrine cell
12
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