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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
12
ATAC-seq
4
total RNA-seq
1
DNase-seq
Assay category
67
DNA binding
13
DNA accessibility
4
Transcription
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
54
bam
54
fastq
51
bigWig
45
bed narrowPeak
14
tagAlign
11
bed bed3+
5
bed bed3
3
bed bedgraph
3
txt
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
84
Homo sapiens
Biosample type
379
tissue
147
primary cell
84
in vitro differentiated cells
6
cell line
Organ
81
connective tissue
Project
84
AMP
Genome assembly (visualization)
61
hg19
49
GRCh38
Lab
81
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
1
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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