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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
53
ChIP-seq
15
ATAC-seq
2
DNase-seq
1
RRBS
Assay category
76
Transcription
53
DNA binding
17
DNA accessibility
1
DNA methylation
Target of assay
38
histone
38
histone modification
22
narrow histone mark
16
broad histone mark
13
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
134
fastq
58
bam
46
bigWig
33
bed narrowPeak
19
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
12
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
147
Homo sapiens
Biosample type
379
tissue
147
primary cell
81
in vitro differentiated cells
6
cell line
Organ
78
pancreas
66
epithelium
Project
76
HPAP
71
AMP
Genome assembly (visualization)
47
hg19
42
GRCh38
Lab
76
Klaus Kaestner, Upenn
71
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
147 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell
27
13
1
exocrine cell
39
pancreatic beta cell
10
13
1
skeletal muscle myoblast
15
2
1
pancreatic endocrine cell
12
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
pancreatic acinar cell
1
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