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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
75
ChIP-seq
4
WGBS
3
RRBS
2
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
75
DNA binding
7
DNA methylation
4
DNA accessibility
Target of assay
40
histone modification
39
histone
23
transcription factor
21
broad histone mark
18
narrow histone mark
12
control
2
RNA binding protein
Date released
175
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
178
bigWig
175
fastq
170
bam
89
tsv
66
bed narrowPeak
59
tagAlign
26
bed bed3+
26
bed broadPeak
22
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
168
Homo sapiens
Biosample type
175
tissue
54
in vitro differentiated cells
29
primary cell
Organ
127
pancreas
28
liver
18
adipose tissue
18
connective tissue
2
musculature of body
Project
175
AMP
Genome assembly (visualization)
160
hg19
158
GRCh38
Lab
175
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
epithelium
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
22
1
1
liver
25
1
1
pancreas
14
white adipose tissue
12
adipose tissue
2
3
skeletal muscle tissue
2
right lobe of liver
1
subcutaneous adipose tissue
1
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