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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
18
total RNA-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
31
DNA binding
18
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
13
histone
13
histone modification
12
transcription factor
7
broad histone mark
6
control
6
narrow histone mark
2
RNA binding protein
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
34
bigWig
26
bed narrowPeak
23
bam
18
tsv
2
bedpe bed3+
2
hic
1
vcf
Organism
60
Homo sapiens
Biosample type
269
tissue
60
cell line
47
in vitro differentiated cells
4
primary cell
Organ
31
liver
18
epithelium
18
pancreas
8
embryo
2
kidney
Project
60
AMP
Genome assembly (visualization)
37
hg19
21
GRCh38
Lab
34
Bing Ren, UCSD
26
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
EndoC_BH1
13
1
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
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