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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
Assay category
57
DNA binding
5
DNA accessibility
1
DNA methylation
Target of assay
41
histone
41
histone modification
24
narrow histone mark
17
broad histone mark
14
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
Available data
57
bam
53
fastq
44
bigWig
31
bed narrowPeak
16
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
3
bed bed3+
Organism
57
Homo sapiens
Biosample type
176
tissue
88
in vitro differentiated cells
57
primary cell
18
cell line
Organ
38
pancreas
30
epithelium
4
liver
Project
57
AMP
Genome assembly (visualization)
44
hg19
42
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
primary cell
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
hepatocyte
4
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