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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
Assay category
163
DNA binding
24
Transcription
18
DNA accessibility
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
95
histone
95
histone modification
49
narrow histone mark
45
broad histone mark
35
transcription factor
33
control
7
RNA binding protein
3
chromatin remodeller
Date released
324
November, 2017
165
May, 2021
120
August, 2017
60
November, 2018
47
October, 2019
46
December, 2017
43
August, 2021
32
September, 2018
31
June, 2019
27
December, 2018
24
February, 2018
18
January, 2019
13
November, 2019
8
February, 2021
5
May, 2019
1
March, 2020
Available data
130
bam
118
bigWig
106
fastq
100
bed narrowPeak
50
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
bed bed3+
Organism
163
Homo sapiens
Biosample type
tissue
88
in vitro differentiated cells
57
primary cell
18
cell line
Organ
67
connective tissue
38
pancreas
30
epithelium
22
liver
Project
163
AMP
Genome assembly (visualization)
118
hg19
103
GRCh38
Lab
145
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
163 results
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Clear Filters
ChIP-seq
in vitro differentiated cells
adipocyte
67
neural progenitor cell
21
primary cell
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
hepatocyte
4
cell line
HepG2
18
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