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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
Assay category
134
DNA binding
89
Transcription
9
DNA accessibility
8
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
134
August, 2017
80
November, 2017
52
December, 2017
43
October, 2018
32
September, 2018
24
February, 2018
11
January, 2019
9
October, 2017
6
December, 2018
6
November, 2018
6
September, 2017
Available data
134
bam
134
fastq
124
bigWig
108
bed narrowPeak
85
tagAlign
37
bed broadPeak
30
bigBed narrowPeak
14
bed bed3+
11
bigBed broadPeak
Organism
127
Homo sapiens
Biosample type
52
tissue
51
primary cell
31
in vitro differentiated cells
Organ
67
pancreas
33
connective tissue
26
epithelium
21
liver
2
adipose tissue
Project
134
AMP
Genome assembly (visualization)
106
hg19
105
GRCh38
Lab
134
AMP-T2D consortium
Audit category:
16
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
tissue
liver
21
islet of Langerhans
15
pancreas
14
adipose tissue
2
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
skeletal muscle myoblast
13
pancreatic endocrine cell
12
in vitro differentiated cells
adipocyte
31
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