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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
84
RNA microarray
27
ATAC-seq
27
snATAC-seq
18
single cell RNA-seq
15
WGBS
6
RRBS
5
DNase-seq
3
snDrop-seq
2
pCHi-C
1
FAIRE-seq
Assay category
DNA binding
60
DNA accessibility
21
DNA methylation
18
Transcription
Date released
202
August, 2021
187
June, 2019
174
May, 2022
162
February, 2021
112
February, 2023
101
May, 2020
64
July, 2019
52
May, 2021
49
April, 2018
48
July, 2018
47
September, 2023
46
March, 2020
43
September, 2020
42
October, 2019
28
November, 2019
26
August, 2017
19
April, 2020
18
November, 2018
16
January, 2021
15
September, 2018
14
May, 2023
12
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
December, 2018
Available data
89
txt
62
fastq
31
bam
28
bed narrowPeak
14
tsv
13
bigWig
10
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
188
Homo sapiens
Biosample type
120
tissue
53
primary cell
10
cell line
5
in vitro differentiated cells
Organ
92
bone element
14
connective tissue
11
pancreas
9
epithelium
9
liver
8
artery
8
blood vessel
8
heart
8
kidney
8
skeleton
8
vasculature
7
adipose tissue
6
limb
4
musculature of body
Project
143
AMP
45
HPAP
Genome assembly (visualization)
38
hg19
27
GRCh38
Lab
143
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
total RNA-seq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
188 results
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Clear Filters
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
WGBS
RRBS
DNase-seq
snDrop-seq
pCHi-C
FAIRE-seq
tissue
bone element
84
kidney
5
liver
1
3
1
skeletal muscle tissue
4
adipose tissue
3
+ See 15 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
1
6
skeletal muscle myoblast
1
2
osteoblast
1
1
pancreatic acinar cell
1
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
in vitro differentiated cells
adipocyte
4
1
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