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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
151
DNA binding
7
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
280
November, 2017
210
June, 2019
191
October, 2019
160
August, 2017
103
May, 2021
96
May, 2019
90
August, 2021
79
November, 2018
77
December, 2017
64
April, 2019
48
July, 2018
46
September, 2018
45
October, 2018
43
April, 2018
37
November, 2019
35
February, 2023
35
July, 2019
30
December, 2018
23
February, 2021
21
January, 2019
19
May, 2020
16
February, 2018
14
October, 2017
11
May, 2023
7
August, 2020
7
September, 2017
3
August, 2018
3
June, 2018
3
March, 2020
3
September, 2020
2
March, 2019
2
November, 2020
1
March, 2023
Available data
160
bam
160
fastq
158
bigWig
118
bed narrowPeak
38
bigBed narrowPeak
33
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
154
Homo sapiens
Biosample type
69
tissue
49
in vitro differentiated cells
42
primary cell
Organ
65
connective tissue
63
pancreas
19
liver
17
epithelium
16
adipose tissue
Project
160
AMP
Genome assembly (visualization)
187
hg19
160
GRCh38
Lab
160
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
160 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
21
1
liver
18
pancreas
12
white adipose tissue
12
adipose tissue
1
2
+ See 2 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
13
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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