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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
196
DNA binding
7
DNA accessibility
2
DNA methylation
Target of assay
133
histone modification
132
histone
68
broad histone mark
63
narrow histone mark
61
transcription factor
18
RNA binding protein
3
chromatin remodeller
2
control
Date released
280
November, 2017
210
June, 2019
191
October, 2019
160
August, 2017
103
May, 2021
96
May, 2019
90
August, 2021
79
November, 2018
77
December, 2017
64
April, 2019
49
April, 2018
48
July, 2018
46
September, 2018
45
October, 2018
40
May, 2024
37
November, 2019
35
February, 2023
35
July, 2019
30
December, 2018
23
February, 2021
21
January, 2019
19
May, 2020
16
February, 2018
14
October, 2017
11
May, 2023
7
August, 2020
7
September, 2017
3
August, 2018
3
June, 2018
3
March, 2020
3
September, 2020
2
March, 2019
2
November, 2020
1
March, 2023
Available data
205
bam
203
bigWig
191
fastq
163
bed narrowPeak
83
bigBed narrowPeak
33
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
199
Homo sapiens
Biosample type
114
tissue
49
in vitro differentiated cells
42
primary cell
Organ
103
pancreas
70
connective tissue
21
adipose tissue
19
liver
17
epithelium
Project
205
AMP
Genome assembly (visualization)
232
hg19
205
GRCh38
Lab
205
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
17
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
body of pancreas
25
islet of Langerhans
21
1
liver
18
endocrine pancreas
14
pancreas
13
+ See 5 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
13
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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