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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
total RNA-seq
9
WGBS
5
RRBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
232
DNA binding
14
DNA methylation
6
DNA accessibility
Target of assay
156
histone modification
155
histone
90
broad histone mark
64
narrow histone mark
39
transcription factor
37
control
6
RNA binding protein
Date released
376
November, 2017
252
August, 2017
252
October, 2019
241
August, 2021
163
June, 2019
123
February, 2021
115
May, 2019
100
February, 2023
83
December, 2017
82
November, 2018
80
April, 2019
73
October, 2018
66
May, 2021
51
May, 2020
48
March, 2020
47
September, 2023
46
July, 2019
41
November, 2019
40
May, 2022
40
May, 2024
35
December, 2018
25
January, 2019
23
October, 2017
22
February, 2018
19
April, 2020
14
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
129
fastq
126
bigWig
124
bam
98
bed narrowPeak
73
tagAlign
29
bed bed3+
27
bed broadPeak
18
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
245
Homo sapiens
Biosample type
190
tissue
62
in vitro differentiated cells
primary cell
Organ
119
connective tissue
57
adipose tissue
54
pancreas
53
liver
26
musculature of body
Project
252
AMP
Genome assembly (visualization)
129
hg19
107
GRCh38
Lab
252
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
252 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
47
3
1
islet of Langerhans
42
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
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in vitro differentiated cells
adipocyte
61
1
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