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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
total RNA-seq
5
ATAC-seq
4
RRBS
4
WGBS
3
DNase-seq
1
FAIRE-seq
Assay category
165
DNA binding
9
DNA accessibility
8
DNA methylation
Target of assay
93
histone modification
92
histone
46
broad histone mark
45
narrow histone mark
41
transcription factor
31
control
8
RNA binding protein
1
chromatin remodeller
Date released
303
November, 2017
182
August, 2017
83
December, 2017
83
November, 2018
57
October, 2018
48
July, 2018
47
September, 2018
45
February, 2021
44
April, 2018
35
December, 2018
25
January, 2019
25
September, 2020
22
February, 2018
18
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
182
fastq
177
bam
167
bigWig
126
bed narrowPeak
85
tagAlign
41
bed broadPeak
36
bigBed narrowPeak
29
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
175
Homo sapiens
Biosample type
81
tissue
53
primary cell
48
in vitro differentiated cells
Organ
71
pancreas
66
connective tissue
27
liver
25
epithelium
18
adipose tissue
2
musculature of body
Project
182
AMP
Genome assembly (visualization)
150
hg19
144
GRCh38
Lab
182
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
total RNA-seq
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
182 results
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Clear Filters
ChIP-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
liver
24
1
1
islet of Langerhans
22
1
1
white adipose tissue
12
pancreas
10
adipose tissue
2
3
+ See 3 more…
primary cell
skeletal muscle myoblast
14
1
1
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
47
1
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