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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
4
RRBS
2
DNase-seq
2
WGBS
Assay category
39
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
37
histone
37
histone modification
22
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
70
November, 2017
47
August, 2017
23
July, 2019
16
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
198
fastq
193
bam
183
bigWig
142
bed narrowPeak
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
41
Homo sapiens
Biosample type
31
tissue
15
primary cell
1
in vitro differentiated cells
Organ
15
musculature of body
12
pancreas
4
connective tissue
3
adipose tissue
1
liver
Project
47
AMP
Genome assembly (visualization)
45
hg19
21
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
2
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
RRBS
DNase-seq
WGBS
tissue
skeletal muscle tissue
13
2
islet of Langerhans
6
pancreas
6
adipose tissue
2
liver
1
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primary cell
skeletal muscle myoblast
13
1
1
in vitro differentiated cells
adipocyte
1
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