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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
370
ChIP-seq
91
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
370
DNA binding
5
DNA accessibility
Target of assay
229
histone modification
228
histone
128
broad histone mark
99
narrow histone mark
79
control
62
transcription factor
19
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
301
August, 2017
252
October, 2019
218
June, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
79
November, 2018
74
October, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
1
November, 2020
Available data
259
bam
242
fastq
220
bigWig
181
bed narrowPeak
85
tagAlign
81
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
Organism
368
Homo sapiens
Biosample type
252
tissue
68
in vitro differentiated cells
55
primary cell
Organ
146
pancreas
141
connective tissue
73
adipose tissue
49
liver
26
epithelium
22
musculature of body
Project
375
AMP
Genome assembly (visualization)
222
hg19
198
GRCh38
Lab
375
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
17
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
375 results
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Clear Filters
ChIP-seq
DNase-seq
tissue
liver
48
islet of Langerhans
42
1
subcutaneous abdominal adipose tissue
36
body of pancreas
33
skeletal muscle tissue
22
+ See 7 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
See all biosamples
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